PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_90757F0CC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 331aa    MW: 35906.4 Da    PI: 7.5955
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_90757F0CC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.5e-30172231159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed +vve tYegeHnh+
  Traes_5BL_90757F0CC.1 172 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSAEDSSVVEATYEGEHNHP 231
                            58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.463167233IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.6E-29168233IPR003657WRKY domain
SuperFamilySSF1182902.09E-25169233IPR003657WRKY domain
SMARTSM007741.6E-34172232IPR003657WRKY domain
PfamPF031061.0E-24173231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MCCFWTMGTA PVCLDLMVGR PMDHEPSPVR CTGVRTEADV ASSACDRAPP MTNDEAKILE  60
AKLAQVSEEN RKLTEMIAYL YGNQVSRQSP DGEGQQRART AASPTPPAGK KRSQESMDAS  120
HSCDVEISNR NVGTGEAEHV DVDSPLSNGT CRRIKVKKVC TRIDPSDTSL VVKDGYQWRK  180
YGQKVTRDNP SPRAYFRCAF APSCPVKKKV QRSAEDSSVV EATYEGEHNH PHPTRAGELP  240
SYAARSGGSV PCSISTNSSG PTITLDLTKN GGGVQVLDAG EAQPDMKKVC RAVASPEFQR  300
ALVEQMAREL TGDQKFTDAL AAAILRKLPD Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-191712331374WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4243110.0JX424311.1 Triticum monococcum WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578125.11e-156PREDICTED: probable WRKY transcription factor 40
TrEMBLW5FEV40.0W5FEV4_WHEAT; Uncharacterized protein
STRINGMLOC_4945.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-53WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]